[Paraview] Exodus weirdness

Weirs, V Gregory vgweirs at sandia.gov
Fri May 1 10:59:50 EDT 2009


OK, without D3 you will always see the processor boundaries. Paraview is see all the individual .exo files as independent, until you apply D3. CleanToGrid takes points that are essentially on top of each other and merges them. Nodes on processor boundaries are written to both exodus files, so before CleanToGrid you have, effectively, double valued nodes at processor boundaries; even though the nodes are at the same location, and the values are actually the same (if we wrote them out correctly) Paraview is probably trying to interpolate between them somehow.

CellToPoint can hide the discrepancy by slightly smoothing the data when interpolating from cells to points.

These are possible and sensible explanations, but without seeing the data we can't be sure. Try D3 and CleanToGrid, and if you can still see processor boundaries we would want to look deeper, if that's possible.

Greg

On 5/1/09 8:27 AM, "Rick Angelini" <angel at arl.army.mil> wrote:

It's the boundaries from the original simulation. However, running
through the D3 filter and then doing a cell2point seems to clean up the
boundary edges.

Thanks


Moreland, Kenneth wrote:
> I don't recall seeing anything quite like that before. Are these
> boundaries in question those in the original simulation (noted by the
> file number) or the processes in your visualization (which can be
> annotated with the Process Id Scalars filter)? Does running the data
> through D3 help?
>
> -Ken
>
>
> On 4/30/09 1:30 PM, "Rick Angelini" <angel at arl.army.mil> wrote:
>
>     I am working with one of my customers viewing an Exodus dataset
>     generated by Alegra(?) using 256p. The dataset loads fine, but seems
>     to have an issue at the processor boundaries. When viewing the
>     dataset using something like a clip plane or isosurface, the data
>     seems
>     to be "slipped" (or offset) at each processor boundary - that is,
>     there
>     appears to be a hard edge at each processor boundary. Unfortunately,
>     I'm not able to post an image that represents the problem.
>
>     I'm not familiar with the Exodus data format, but it looks like it
>     could
>     be an issue associate with ghost cells. Either there are no ghost
>     cells at the processor boundary layer, or they're possibly being
>     mismanaged? Curiously enough, this is the first time we've noticed
>     this problem after processing quite a few Exodus datasets. We're
>     using the latest production version of Paraview (3.4) and we've also
>     been able to duplicate the issue with other visualization tools, so we
>     think this is a problem with this particular Exodus dataset, if
>     not the
>     Exodus format in general.
>
>     Any ideas?
>
>
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> **** Kenneth Moreland
> *** Sandia National Laboratories
> ***********
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